#!/bin/csh
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# Script for finding some solution to execises of the book:
# Jérôme Euzenat & Pavel Shvaiko, Ontology matching (2nd edition), Springer, 2013
#
# This directory:
# (C) Jérôme Euzenat & Pavel Shvaiko, 2007-2011, 2013

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# Configuration

setenv CWD `pwd`
setenv LIB /Java/alignapi/lib
setenv CPATH classes:$LIB/slf4j/logback-core-1.0.9.jar:$LIB/slf4j/logback-classic-1.0.9.jar:$LIB/procalign.jar

/bin/rm -rf tex
/bin/mkdir tex
/bin/rm -rf output
/bin/mkdir output
/bin/mkdir classes
/bin/cp logback.xml classes

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl 

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# Problem C5.1: Outputing distance matrix

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=subStringDistance -DprintMatrix=1 -o /dev/null > tex/substring.tex

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=ngramDistance -DprintMatrix=1 -o /dev/null > tex/ngram.tex

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=levenshteinDistance -DprintMatrix=1 -o /dev/null > tex/edit.tex

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=jaroWinklerMeasure -DprintMatrix=1 -o /dev/null > tex/jarowinkler.tex

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# Problem C5.2: Outputing distance matrix with WordNet distances

# The place where WordNet is installed
setenv WNDIR /Java/WordNet-3.0/dict

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign -Dwndict=$WNDIR -Dwnfunction=cosynonymySimilarity file://$CWD/admin.owl file://$CWD/lab.owl -i fr.inrialpes.exmo.align.ling.JWNLAlignment -Dwndir=$WNDIR -DprintMatrix=1 -o /dev/null > tex/cosynonym.tex

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign -Dwnfunction=glossOverlapSimilarity file://$CWD/admin.owl file://$CWD/lab.owl -i fr.inrialpes.exmo.align.ling.JWNLAlignment -Dwndict=$WNDIR -DprintMatrix=1 -o /dev/null > tex/glossoverlap.tex

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign -Dwnfunction=wuPalmerSimilarity file://$CWD/admin.owl file://$CWD/lab.owl -i fr.inrialpes.exmo.align.ling.JWNLAlignment -Dwndict=$WNDIR -DprintMatrix=1 -o /dev/null > tex/wupalmer.tex

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# Problem C6: Extensional distance computation

javac -d classes -classpath :$LIB/align.jar:$LIB/procalign.jar:$LIB/ontosim/ontosim.jar InstanceBasedAlignment.java

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -i org.ontologymatching.book.InstanceBasedAlignment -Dcmeasure=singlel -DprintMatrix=1 -o output/instancebased.rdf > tex/instancebased1.tex

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -i org.ontologymatching.book.InstanceBasedAlignment -Dimeasure=substring -Dcmeasure=singlel -DprintMatrix=1 -o /dev/null > tex/instancebased2.tex

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# Problem C7: Measure aggregation

javac -d classes -classpath classes:$LIB/align.jar:$LIB/procalign.jar:$LIB/ontosim/ontosim.jar AggregateAlignment.java

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -i org.ontologymatching.book.AggregateAlignment -Dmethod=max -DprintMatrix=1 -o /dev/null > tex/aggr1.tex

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -i org.ontologymatching.book.AggregateAlignment -Dmethod=wprod -Dw1=.6666 -DprintMatrix=1 -o /dev/null > tex/aggr2.tex

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -i org.ontologymatching.book.AggregateAlignment -Dmethod=wsum -Dw1=.6666 -DprintMatrix=1 -o /dev/null > tex/aggr3.tex

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -i org.ontologymatching.book.AggregateAlignment -Dmethod=owa -Dw1=.6666 -DprintMatrix=1 -o /dev/null > tex/aggr4.tex

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# Problem C8: Thresholding
# fullalign.rdf: the alignment given by the matrix of table

java -cp $CPATH fr.inrialpes.exmo.align.cli.ParserPrinter -T hard -t .6 file:fullalign.rdf -o output/hardthreshold.rdf

java -cp $CPATH fr.inrialpes.exmo.align.cli.ParserPrinter -T prop -t .6 file:fullalign.rdf -o output/propthreshold.rdf

java -cp $CPATH fr.inrialpes.exmo.align.cli.ParserPrinter -T span -t .6 file:fullalign.rdf -o output/deltathreshold.rdf

java -cp $CPATH fr.inrialpes.exmo.align.cli.ParserPrinter -T perc -t .6 file:fullalign.rdf -o output/percthreshold.rdf

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# Problem C9: Extracting

javac -d classes -classpath classes:$LIB/align.jar:$LIB/procalign.jar ExtractAlignment.java

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -a fullalign.rdf -i org.ontologymatching.book.ExtractAlignment -o output/maximumweight.rdf

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# Problem C10: Compose

# Has been defined:
# - InstanceBasedAlignment
# - AggregateAlignment
# - ExtractAlignment
# + GlossOverlapAlignment and InstanceBasedAlignment
# 
# There remain to create the matcher that does both...

javac -d classes -classpath classes:$LIB/align.jar:$LIB/procalign.jar ComposedAlignment.java

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -i org.ontologymatching.book.ComposedAlignment -o output/composed.rdf

java -cp $CPATH fr.inrialpes.exmo.align.cli.Procalign file://$CWD/admin.owl file://$CWD/lab.owl -i org.ontologymatching.book.ComposedAlignment -T perc -t .6 -Dmethod=oma -Dw1=.6666 -o output/composedmax.rdf
# -Dmethod=max does not work?

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# Problem C11: Evaluate

java -cp $LIB/procalign.jar fr.inrialpes.exmo.align.cli.EvalAlign -i fr.inrialpes.exmo.align.impl.eval.PRecEvaluator file://$CWD/refalign.rdf file://$CWD/refalign.rdf

java -cp $LIB/procalign.jar fr.inrialpes.exmo.align.cli.EvalAlign -i fr.inrialpes.exmo.align.impl.eval.PRecEvaluator file://$CWD/refalign.rdf file://$CWD/A1.rdf

java -cp $LIB/procalign.jar fr.inrialpes.exmo.align.cli.EvalAlign -i fr.inrialpes.exmo.align.impl.eval.PRecEvaluator file://$CWD/refalign.rdf file://$CWD/A2.rdf

java -cp $LIB/procalign.jar fr.inrialpes.exmo.align.cli.EvalAlign -i fr.inrialpes.exmo.align.impl.eval.PRecEvaluator file://$CWD/refalign.rdf file://$CWD/A3.rdf

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# Problem C13: Rendering

java -cp $CPATH fr.inrialpes.exmo.align.cli.ParserPrinter -r fr.inrialpes.exmo.align.impl.renderer.OWLAxiomsRendererVisitor file:refalign.rdf -o output/refalign.owl

java -cp $CPATH fr.inrialpes.exmo.align.cli.ParserPrinter -r fr.inrialpes.exmo.align.impl.renderer.COWLMappingRendererVisitor file:refalign.rdf -o output/refalign.cowl

java -cp $CPATH fr.inrialpes.exmo.align.cli.ParserPrinter -r fr.inrialpes.exmo.align.impl.renderer.SWRLRendererVisitor file:refalign.rdf -o output/refalign.swrl

javac -d classes -classpath classes:$LIB/align.jar:$LIB/procalign.jar RenderEDOAL.java

java -cp $CPATH org.ontologymatching.book.RenderEDOAL refalign.rdf > output/refalign.rdf

java -cp $CPATH fr.inrialpes.exmo.align.cli.ParserPrinter -r fr.inrialpes.exmo.align.impl.renderer.SKOSRendererVisitor file:refalign.rdf -o output/refalign.skos

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# Problem C16: Data translation

java -cp $CPATH fr.inrialpes.exmo.align.cli.ParserPrinter -r fr.inrialpes.exmo.align.impl.renderer.XSLTRendererVisitor file:refalign.rdf -o output/refalign.xslt

javac -d classes -classpath classes:$LIB/align.jar:$LIB/procalign.jar Translate.java

java -cp $CPATH org.ontologymatching.book.Translate refalign.rdf > output/translated.rdf

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# CLOSING

/bin/rm -rf classes